Say by transitive dependencies, alpha_v0 and beta_v0 are imported, and due to vulnerability, you upgrade beta_v0 -> beta_v1 (let's assume that trait is essential for the vulnerability resolution).
Now what? You either have to skip future updates, or keep the vulnerable beta_v0 crate.
Yes, that's the downside of relaxing the orphan rule. That doesn't mean there has to be a way for the top-level crate to work around that, other than avoiding having both of those in its dependency tree.
Ideally, people would tend to put trait implementations for a given pair of crates in a unique library crate, implement them in the obvious way, and provide that as a library for people to use.
At least initially, the resolution mechanism could be "don't include more than one implementation".